Protocols

C. elegans Whole Gonad Image Analysis Pipeline Protocol (step-by-step)

Codes/Scripts

Gonad Linearization Algorithm

"Find Spots Close to Surface" MATLAB

transposon-tracking  (https://github.com/libudalab/transposon-tracking)

Animation of how the Gonad Linearization Algorithm takes nuclei along a curved (non-linear) gonad and determines their relative position along the distal-proximal axis of the C. elegans germline. (courtesy of E. Toraason)